Joe Barycki
Bio
Research Interests
My research program is focused on cellular detoxification pathways. Glutathione, an abundant low molecular weight thiol, is largely responsible for the tightly controlled maintenance of intracellular reduction-oxidation status essential for normal cellular function. Despite its ubiquitous distribution and critical functions in mammalian systems, numerous aspects of glutathione homeostasis remain unresolved. My laboratory uses a variety of biophysical techniques, including protein crystallography, enzymology, and protein chemistry, to examine the mechanisms of the enzymes responsible for maintaining reduced glutathione reservoirs. We have also recently developed eukaryotic model systems to validate our results in relevant contexts. Our work has provided a structural framework to examine regulation of glutathione metabolism at a molecular level, with the ultimate goal of controlling flux through the glutathione pathway. A major focus of the lab is examining how small molecule metabolites involved in cellular detoxification pathways, are directed to a given metabolic fate. In collaboration with the Simpson laboratory, we have been studying human UDP-glucose dehydrogenase. The product of this enzyme, UDP-glucuronate, has similar detoxification functions as glutathione. We are attempting to determine the regulatory mechanisms that dictate partitioning of UDP-glucuronate to one of three fates: hyaluronan production, proteoglycan biosynthesis, and detoxification by UDP-glucuronosyltransferases.
Education
B.S. Biology (Biochemistry emphasis) University of Rochester
Ph.D. Chemistry & Biochemistry University of Delaware
Postdoctoral Protein Crystallography University of Minnesota
Area(s) of Expertise
- Redox processes
- Cellular detoxification
- Enzymology/Protein chemistry
- X-ray crystallography
- Structural biology
Publications
- C-terminally clustered UGDH hypomorphic variants reveal subtle mechanisms of cellular and developmental disruption , Matrix Biology (2026)
- Recent insights into the implications of UGDH mutations for human developmental disease , Biochemical Society Transactions (2025)
- Mechanisms of coordinating hyaluronan and glycosaminoglycan production by nucleotide sugars , American Journal of Physiology-Cell Physiology (2022)
- Altered glucuronidation deregulates androgen dependent response profiles and signifies castration resistance in prostate cancer , Oncotarget (2021)
- Integration of Sugar Metabolism and Proteoglycan Synthesis by UDP-glucose Dehydrogenase , Journal of Histochemistry & Cytochemistry (2020)
- Loss-of-function mutations in UDP-Glucose 6-Dehydrogenase cause recessive developmental epileptic encephalopathy , Nature Communications (2020)
- Covering their bases: The phosphobase methylation pathway in plants , Journal of Biological Chemistry (2017)
- Inhibiting Hexamer Disassembly of Human UDP-Glucose Dehydrogenase by Photoactivated Amino Acid Cross-Linking , Biochemistry (2016)
- Loss of exogenous androgen dependence by prostate tumor cells is associated with elevated glucuronidation potential , Hormones and Cancer (2016)
- Potassium and the K+/H+ Exchanger Kha1p Promote Binding of Copper to ApoFet3p Multi-copper Ferroxidase , Journal of Biological Chemistry (2016)
Grants
Prostate epithelial cells partly control the potency and availability of androgens by inactivating and excreting them through a process termed glucuronidation. Function of the glucuronidation pathway in prostate cancer is a significant component of the response to androgen deprivation therapy (ADT). The inevitable recurrence of prostate cancer on ADT (castration resistant prostate cancer, CRPC) has few treatment options and ultimately results in mortality. UDP-glucose dehydrogenase (UGDH) is required for glucuronidation and its elevated expression predicts ADT recurrence. Because UGDH is the sole enzyme responsible for synthesis of the UDP-glucuronate precursor for glucuronidation, UGDH is a promising target in the battle against CRPC. Though UDP-glucuronate has three fates in the prostate cell, we have shown that the manipulation of UGDH expression can selectively control activity of the glucuronidation pathway and resultant growth potential of tumor cells. In this collaborative proposal, we will advance work we have done to determine how activity of UGDH in the cell is controlled by the AGC kinase RSK3, and capitalize on a novel peptide inhibitor of UGDH we identified. Hypothesis: Selective inhibition of UGDH will delay, prevent, or reverse emergence of castration resistant hallmarks in prostate tumor cells, thereby optimizing response of prostate cancer to androgen deprivation therapy. Aim 1: Determine the efficacy of RSK3-UGDH combined inhibition on cellular androgen response and prostate tumor growth kinetics in vitro, using isogenic AD and CR cells and PDX models. Aim 2: Use a high throughput approach to identify next generation peptides and small molecule lead compounds for selective inhibition of UGDH.
UDP-glucose dehydrogenase (UGDH) provides an essential precursor for elimination of excess androgen hormones from the prostate by glucuronidation. Its expression is elevated in cancerous prostate glands within biopsied tissue, relative to normal glands and to normal appearing adjacent glands, in which expression is depressed. Using tissue microarrays, which consisted of pathologist-graded biopsy specimens collected from patients prior to beginning androgen deprivation therapy, we evaluated whether UGDH levels could predict response to therapy. The patients had been followed for five years and evaluated for response versus recurrence. Each microarray slide consisted of 100 biopsies. One slide contained specimens from patients who responded. The other slide contained those of patients who experienced recurrence. We immunostained the slides and quantified fluorescence intensity of cancerous and normal appearing adjacent glands in each specimen. All cancerous glands overexpressed UGDH relative to normal glands. Importantly, a significant difference between cancerous and normal adjacent glands was found to correlate with response to androgen deprivation therapy. These preliminary data suggest UGDH will be useful as a predictive biomarker for success of androgen deprivation therapy. Additional work by our lab demonstrated that UGDH expression can be manipulated to control intracellular androgen levels, suggesting it may also be a good therapeutic target to sustain strong androgen response during therapy, thereby sensitizing prostate tumor cells to drugs such as abiraterone or other anti-androgens. In this proposal, we will test this hypothesis by implanting androgen sensitive and castration resistant prostate tumor cells with manipulated UGDH expression into intact and castrated mice. We will evaluate tumor growth kinetics, as well as a complete endpoint profile of glucuronidation pathway proteins and metabolites to determine effects of UGDH modulation on hormone dependent tumor growth. Successful completion of these studies will functionally implicate UGDH in prostate cancer progression and highlight it as a new drug target.
UDP-glucose dehydrogenase (UGDH) is a unique, essential enzyme with the central role of providing UDPglucuronate,a rate-limiting precursor for plasma membrane hyaluronan synthesis, Golgi proteoglycan production, and ER-localized modification of hormones for elimination. Our laboratory has shown that insufficiency of UGDH contributes to loss of control of intracellular steroid levels, and dysregulated tumor cell growth rate in prostate cancer. It is not known how the cytosolic UDP-glucuronate is partitioned to itsrespective fates in the high levels needed for specifically timed product formation, nor how UGDH activity is controlled to limit competition with other pathways. Our hypothesis for this proposal is that hexameric and dimeric units of UGDH sense metabolic status of the cell and respond with increased or decreased enzymatic activity. Information for molecular sensing is conveyed partly through differential protein-protein interactions that occur upon exposure of the dimer-dimer interface. We will test this with two aims. Aim 1: Determine the functional outcome of specific UGDH interactions with components of the androgen elimination pathway. We will directly measure interactions of UGDH with hyaluronan synthase, the Golgi UDP-xylose transporter, and the ER UDP-glucuronate transporter, as the three proteins that mediate the demands for UDP-glucuronate flux. We will quantify UDP-glucuronate, steroid-glucuronide, notch glycosylation and hyaluronan production, which will respectively report overall UGDH activity, and functional distribution to the ER for androgen elimination, the Golgi for proteoglycan secretion, or the plasma membrane for hyaluronan synthesis. Aim 2: Characterize and validate the UGDH interactome using an unbiased approach. We will use mass spectrometry to identify proteins that differentially co-fractionate by size exclusion chromatography with our wellcharacterized hexameric and dimeric point mutants. As a complementary approach, we will identify proteins that cross-link with hexameric versus dimeric UGDH point mutants that incorporate a photo-activatable crosslinker as a non-natural amino acid. Validated interactions and/or post-translational modifications will be used to design strategies for selective partitioning of UDP-glucuronate to favor hormone elimination in future preclinical studies of prostate cancer.